Berkan Lafci

Senior Machine Learning Research Scientist at Align

       

Publications

• Full-Waveform Inversion With Resolution Proxies for In-Vivo Ultrasound Computed Tomography

  I. E. Ulrich, S. Noe, C. Boehm, N. K. Martiartu, B. Lafci, X. L. Dean-Ben, D. Razansky, A. Fichtner
  IEEE International Ultrasonics Symposium (IUS) Proceedings
  
  

• Signal Domain Adaptation Network for Limited-View Optoacoustic Tomography

  A. Klimovskaia*, B. Lafci*, F. Ozdemir, N. Davoudi, X. L. Dean-Ben, F. Perez-Cruz, D. Razansky
  Medical Image Analysis
  *equal contribution
  
  

• Multimodal Assessment of Non-Alcoholic Fatty Liver Disease with Transmission-Reflection Optoacoustic Ultrasound

  B. Lafci, A. Hadjihambi, M. Determann, C. Konstantinou, C. Freijo, J. L. Herraiz, S. Blumel, L. Pellerin, N. C. Burton, X. L. Dean-Ben, D. Razansky
  Theranostics
  
  

• Multilayer Polymer Shell Perfluoropentane Nanodroplets for Multimodal Ultrasound, Magnetic Resonance, and Optoacoustic Imaging

  E. A. Maksimova, D. Nozdriukhin, S. K. Kalva, S. Lyu, B. Lafci, M. A. Augath, P. G. Rudakovskaya, A. A. Solovev, Y. Mei, X.L. Dean-Ben, D. Razansky, D. A. Gorin
  Laser & Photonics Reviews
  
  

• Full-view LED-based Optoacoustic Tomography

  X. Liu, S. K. Kalva, B. Lafci, D. Nozdriukhin, X.L. Dean-Ben, D. Razansky
  Photoacoustics
  
  

• Real-time Assessment of High-intensity Focused Ultrasound Heating and Cavitation With Hybrid Optoacoustic Ultrasound Imaging

  Ç. Özsoy, B. Lafci, M. Reiss, X.L. Dean-Ben, D. Razansky
  Photoacoustics
  
  

• Development of Hybrid Optoacoustic and Ultrasound Imaging Systems

  B. Lafci
  ETH Zurich Research Collection (PhD Thesis)
  
  

• OADAT: Experimental and Synthetic Clinical Optoacoustic Data for Standardized Image Processing

  F. Ozdemir*, B. Lafci*, X. L. Dean-Ben, D. Razansky, F. Perez-Cruz
  Transactions on Machine Learning Research
  *equal contribution
  
  

• Deep Learning Facilitates Fully Automated Brain Image Registration of Optoacoustic Tomography and Magnetic Resonance Imaging

  Y. Hu*, B. Lafci*, A. Luzgin, H. Wang, J. Klohs, X.L. Dean-Ben, R. Ni, D. Razansky, W. Ren
  Biomedical Optics Express
  *equal contribution
  
  

• Expediting Image Acquisition in Reflection Ultrasound Computed Tomography

  B. Lafci, J. Robin, X. L. Dean-Ben, D. Razansky
  IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control
  
  

• Signal Domain Learning Approach for Optoacoustic Image Reconstruction from Limited View Data

  A. Klimovskaia*, B. Lafci*, F. Ozdemir, N. Davoudi, X. L. Dean-Ben, F. Perez-Cruz, D. Razansky
  MIDL 2022 (Oral Presentation)
  *equal contribution
  
  

• Preoperative Mapping of Lymphatic Vessels by Multispectral Optoacoustic Tomography

  L. Grünherz, E. Gousopoulos, C. Barbon, S. Uyulmaz, B. Lafci, D. Razansky, A. Boss, P. Giovanoli, N. Lindenblatt
  Lymphatic Research and Biology
  
  

• Learning-based Enhancement of Limited-view Optoacoustic Tomography Based on Image- and Time-domain Data

  N. Davoudi*, B. Lafci*, A. Ozbek, X.L. Dean-Ben, D. Razansky
  Photons Plus Ultrasound: Imaging and Sensing, Photonics West 2022
  *equal contribution
  
  

• Deep Learning of Image- and Time-domain Data Enhances The Visibility of Structures in Optoacoustic Tomography

  N. Davoudi*, B. Lafci*, A. Ozbek, X.L. Dean-Ben, D. Razansky
  Optics Letters
  *equal contribution
  
  

• Hemodynamic Response to Sensory Stimulation in Mice: Comparison Between Functional Ultrasound and Optoacoustic Imaging

  J. Robin, R. Rau, B. Lafci, A. Schröter, M. Reiss, X.L. Dean-Ben, O. Goksel, D. Razansky
  NeuroImage
  
  

• Transmission-reflection Optoacoustic Ultrasound (TROPUS) Imaging of Mammary Tumors

  B. Lafci, E. Mercep, J.L. Herraiz, X.L. Dean-Ben, and D. Razansky
  Photons Plus Ultrasound: Imaging and Sensing, Photonics West 2021
  
  

• Deep Learning for Automatic Segmentation of Hybrid Optoacoustic Ultrasound (OPUS) Images

  B. Lafci, E. Mercep, S. Morscher, X.L. Dean-Ben, and D. Razansky
  IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, March 2021
  
  

• Noninvasive Multiparametric Characterization of Mammary Tumors with Transmission-reflection Optoacoustic Ultrasound

  B. Lafci, E. Mercep, J.L. Herraiz, X.L. Dean-Ben, and D. Razansky
  Neoplasia, December 2020
  
  

• Efficient Segmentation of Multi-modal Optoacoustic and Ultrasound Images Using Convolutional Neural Networks

  B. Lafci, E. Mercep, S. Morscher, X.L. Dean-Ben, and D. Razansky
  Photons Plus Ultrasound: Imaging and Sensing, Photonics West 2020
  
  

• Quantitative Image Correction Using Semi- and Fully-automatic Segmentation of Hybrid Optoacoustic and Ultrasound Images

  E. Mercep, B. Lafci, X.L. Dean-Ben, and D. Razansky
  Biophotonics Congress: Biomedical Optics Congress 2018
  
  

• Cost-Effective, Microstrip Antenna Driven Ring Resonator Microwave Biosensor for Biospecific Detection of Glucose

  B. Camli, E. Kusakci, B. Lafci, S. Salman, H. Torun and A. D. Yalcinkaya
  IEEE Journal of Selected Topics in Quantum Electronics, 2017
  
  

• A Microwave Ring Resonator Based Glucose Sensor

  B. Camli, E. Kusakci, B. Lafci, S. Salman, H. Torun, A. Yalcinkaya
  Procedia Engineering, 2016